MRM3 protein (Aotus nancymaae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MRM3

Mitochondrial rRNA methyltransferase 3. (429 aa)

Predicted Functional Partners:

MALSU1

0.888

MRPS30

0.887

MRPL39

0.876

MRPL28

0.867

GTPBP10

0.844

MTG1

0.828

MRPL58

0.828

MRPL11

0.819

MRPL21

0.815

MRPL24

0.815

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GTPBP10	MALSU1	ENSANAP00000004337	ENSANAP00000041809	GTP binding protein 10.	Mitochondrial assembly of ribosomal large subunit 1.	0.905
GTPBP10	MRM3	ENSANAP00000004337	ENSANAP00000001682	GTP binding protein 10.	Mitochondrial rRNA methyltransferase 3.	0.844
GTPBP10	MRPL11	ENSANAP00000004337	ENSANAP00000007679	GTP binding protein 10.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.833
GTPBP10	MRPL21	ENSANAP00000004337	ENSANAP00000005267	GTP binding protein 10.	Mitochondrial ribosomal protein L21.	0.791
GTPBP10	MRPL24	ENSANAP00000004337	ENSANAP00000033959	GTP binding protein 10.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.784
GTPBP10	MRPL28	ENSANAP00000004337	ENSANAP00000008812	GTP binding protein 10.	Mitochondrial ribosomal protein L28.	0.771
GTPBP10	MRPL39	ENSANAP00000004337	ENSANAP00000019972	GTP binding protein 10.	Mitochondrial ribosomal protein L39.	0.744
GTPBP10	MRPL58	ENSANAP00000004337	ENSANAP00000011842	GTP binding protein 10.	Mitochondrial ribosomal protein L58.	0.869
GTPBP10	MRPS30	ENSANAP00000004337	ENSANAP00000038088	GTP binding protein 10.	Mitochondrial ribosomal protein S30.	0.793
GTPBP10	MTG1	ENSANAP00000004337	ENSANAP00000010283	GTP binding protein 10.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.867
MALSU1	GTPBP10	ENSANAP00000041809	ENSANAP00000004337	Mitochondrial assembly of ribosomal large subunit 1.	GTP binding protein 10.	0.905
MALSU1	MRM3	ENSANAP00000041809	ENSANAP00000001682	Mitochondrial assembly of ribosomal large subunit 1.	Mitochondrial rRNA methyltransferase 3.	0.888
MALSU1	MRPL11	ENSANAP00000041809	ENSANAP00000007679	Mitochondrial assembly of ribosomal large subunit 1.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.940
MALSU1	MRPL21	ENSANAP00000041809	ENSANAP00000005267	Mitochondrial assembly of ribosomal large subunit 1.	Mitochondrial ribosomal protein L21.	0.956
MALSU1	MRPL24	ENSANAP00000041809	ENSANAP00000033959	Mitochondrial assembly of ribosomal large subunit 1.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.942
MALSU1	MRPL28	ENSANAP00000041809	ENSANAP00000008812	Mitochondrial assembly of ribosomal large subunit 1.	Mitochondrial ribosomal protein L28.	0.970
MALSU1	MRPL39	ENSANAP00000041809	ENSANAP00000019972	Mitochondrial assembly of ribosomal large subunit 1.	Mitochondrial ribosomal protein L39.	0.966
MALSU1	MRPL58	ENSANAP00000041809	ENSANAP00000011842	Mitochondrial assembly of ribosomal large subunit 1.	Mitochondrial ribosomal protein L58.	0.952
MALSU1	MRPS30	ENSANAP00000041809	ENSANAP00000038088	Mitochondrial assembly of ribosomal large subunit 1.	Mitochondrial ribosomal protein S30.	0.899
MALSU1	MTG1	ENSANAP00000041809	ENSANAP00000010283	Mitochondrial assembly of ribosomal large subunit 1.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.907