Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCA5Lebercilin LCA5. (703 aa)    
Predicted Functional Partners:
NME8
NME/NM23 family member 8.
    
   0.660
WDR90
WD repeat domain 90.
    
   0.615
GPSM2
G protein signaling modulator 2.
    
  0.437
RDH12
Retinol dehydrogenase 12; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.434
EFHB
EF-hand domain family member B.
    
   0.432
TULP1
Tubby-like protein; Belongs to the TUB family.
      
 0.431
AIPL1
Aryl hydrocarbon receptor interacting protein like 1.
      
 0.428
MAP3K7CL
MAP3K7 C-terminal like.
    
 
 0.411
Your Current Organism:
Aotus nancymaae
NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai
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