DDX50 protein (Aotus nancymaae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DDX50

Uncharacterized protein. (690 aa)

Predicted Functional Partners:

PES1-2

0.872

PES1

0.872

DKC1

0.867

BOP1

0.849

WDR12

0.847

EBNA1BP2

0.845

NOP58

0.831

GNL3

0.830

SF3B1

0.779

ENSANAP00000008021

0.775

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	DDX50	ENSANAP00000035933	ENSANAP00000002277	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.849
BOP1	DKC1	ENSANAP00000035933	ENSANAP00000009502	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Dyskerin pseudouridine synthase 1.	0.969
BOP1	EBNA1BP2	ENSANAP00000035933	ENSANAP00000042385	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	EBNA1 binding protein 2.	0.997
BOP1	ENSANAP00000008021	ENSANAP00000035933	ENSANAP00000008021	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	G domain-containing protein.	0.991
BOP1	GNL3	ENSANAP00000035933	ENSANAP00000030940	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	G protein nucleolar 3.	0.991
BOP1	NOP58	ENSANAP00000035933	ENSANAP00000039283	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	NOP58 ribonucleoprotein.	0.990
BOP1	PES1	ENSANAP00000035933	ENSANAP00000037941	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.996
BOP1	PES1-2	ENSANAP00000035933	ENSANAP00000007056	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.996
BOP1	WDR12	ENSANAP00000035933	ENSANAP00000024770	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
DDX50	BOP1	ENSANAP00000002277	ENSANAP00000035933	Uncharacterized protein.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.849
DDX50	DKC1	ENSANAP00000002277	ENSANAP00000009502	Uncharacterized protein.	Dyskerin pseudouridine synthase 1.	0.867
DDX50	EBNA1BP2	ENSANAP00000002277	ENSANAP00000042385	Uncharacterized protein.	EBNA1 binding protein 2.	0.845
DDX50	ENSANAP00000008021	ENSANAP00000002277	ENSANAP00000008021	Uncharacterized protein.	G domain-containing protein.	0.775
DDX50	GNL3	ENSANAP00000002277	ENSANAP00000030940	Uncharacterized protein.	G protein nucleolar 3.	0.830
DDX50	NOP58	ENSANAP00000002277	ENSANAP00000039283	Uncharacterized protein.	NOP58 ribonucleoprotein.	0.831
DDX50	PES1	ENSANAP00000002277	ENSANAP00000037941	Uncharacterized protein.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.872
DDX50	PES1-2	ENSANAP00000002277	ENSANAP00000007056	Uncharacterized protein.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome; Belongs to the pescadillo family.	0.872
DDX50	SF3B1	ENSANAP00000002277	ENSANAP00000007096	Uncharacterized protein.	Splicing factor 3b subunit 1.	0.779
DDX50	WDR12	ENSANAP00000002277	ENSANAP00000024770	Uncharacterized protein.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.847
DKC1	BOP1	ENSANAP00000009502	ENSANAP00000035933	Dyskerin pseudouridine synthase 1.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.969