GTF3C2 protein (Aotus nancymaae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GTF3C2

General transcription factor IIIC subunit 2. (911 aa)

Predicted Functional Partners:

GTF3C3

0.983

GTF3C1

0.978

GTF3C5

0.969

GTF3C4

0.940

ENSANAP00000008690

0.910

BRF1

0.719

POLR3A

0.702

BDP1

0.667

POLR2H

0.655

AK9

0.627

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AK9	GTF3C2	ENSANAP00000021959	ENSANAP00000003707	Adenylate kinase 9.	General transcription factor IIIC subunit 2.	0.627
AK9	POLR3A	ENSANAP00000021959	ENSANAP00000022452	Adenylate kinase 9.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.604
BDP1	BRF1	ENSANAP00000029431	ENSANAP00000014937	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.995
BDP1	ENSANAP00000008690	ENSANAP00000029431	ENSANAP00000008690	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	Uncharacterized protein.	0.563
BDP1	GTF3C1	ENSANAP00000029431	ENSANAP00000039376	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 1.	0.818
BDP1	GTF3C2	ENSANAP00000029431	ENSANAP00000003707	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 2.	0.667
BDP1	GTF3C3	ENSANAP00000029431	ENSANAP00000000172	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 3.	0.987
BDP1	GTF3C4	ENSANAP00000029431	ENSANAP00000009007	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 4.	0.579
BDP1	GTF3C5	ENSANAP00000029431	ENSANAP00000004501	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	General transcription factor IIIC subunit 5.	0.929
BDP1	POLR2H	ENSANAP00000029431	ENSANAP00000004352	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.969
BDP1	POLR3A	ENSANAP00000029431	ENSANAP00000022452	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.987
BRF1	BDP1	ENSANAP00000014937	ENSANAP00000029431	BRF1 RNA polymerase III transcription initiation factor subunit.	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB.	0.995
BRF1	ENSANAP00000008690	ENSANAP00000014937	ENSANAP00000008690	BRF1 RNA polymerase III transcription initiation factor subunit.	Uncharacterized protein.	0.691
BRF1	GTF3C1	ENSANAP00000014937	ENSANAP00000039376	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 1.	0.878
BRF1	GTF3C2	ENSANAP00000014937	ENSANAP00000003707	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 2.	0.719
BRF1	GTF3C3	ENSANAP00000014937	ENSANAP00000000172	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 3.	0.995
BRF1	GTF3C4	ENSANAP00000014937	ENSANAP00000009007	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 4.	0.831
BRF1	GTF3C5	ENSANAP00000014937	ENSANAP00000004501	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 5.	0.858
BRF1	POLR2H	ENSANAP00000014937	ENSANAP00000004352	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.964
BRF1	POLR3A	ENSANAP00000014937	ENSANAP00000022452	BRF1 RNA polymerase III transcription initiation factor subunit.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.984