SAMM50 protein (Aotus nancymaae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SAMM50

SAMM50 sorting and assembly machinery component. (424 aa)

Predicted Functional Partners:

MTX3

0.977

MTX1

0.977

MTX2

0.974

IMMT

0.967

TOMM40

0.966

MBTPS2

0.947

TOMM40L

0.941

TSFM

0.929

ENSANAP00000040893

0.927

ENSANAP00000013325

0.915

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSANAP00000013325	IMMT	ENSANAP00000013325	ENSANAP00000005009	Uncharacterized protein.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.746
ENSANAP00000013325	MTX1	ENSANAP00000013325	ENSANAP00000027841	Uncharacterized protein.	Metaxin.	0.681
ENSANAP00000013325	MTX3	ENSANAP00000013325	ENSANAP00000009476	Uncharacterized protein.	Metaxin.	0.681
ENSANAP00000013325	SAMM50	ENSANAP00000013325	ENSANAP00000006007	Uncharacterized protein.	SAMM50 sorting and assembly machinery component.	0.915
ENSANAP00000013325	TOMM40	ENSANAP00000013325	ENSANAP00000033306	Uncharacterized protein.	Translocase of outer mitochondrial membrane 40.	0.966
ENSANAP00000013325	TOMM40L	ENSANAP00000013325	ENSANAP00000005736	Uncharacterized protein.	Translocase of outer mitochondrial membrane 40 like.	0.936
ENSANAP00000040893	IMMT	ENSANAP00000040893	ENSANAP00000005009	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.973
ENSANAP00000040893	MTX1	ENSANAP00000040893	ENSANAP00000027841	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Metaxin.	0.477
ENSANAP00000040893	MTX2	ENSANAP00000040893	ENSANAP00000009052	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Metaxin 2.	0.827
ENSANAP00000040893	SAMM50	ENSANAP00000040893	ENSANAP00000006007	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	SAMM50 sorting and assembly machinery component.	0.927
ENSANAP00000040893	TOMM40	ENSANAP00000040893	ENSANAP00000033306	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Translocase of outer mitochondrial membrane 40.	0.420
IMMT	ENSANAP00000013325	ENSANAP00000005009	ENSANAP00000013325	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Uncharacterized protein.	0.746
IMMT	ENSANAP00000040893	ENSANAP00000005009	ENSANAP00000040893	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.973
IMMT	MTX1	ENSANAP00000005009	ENSANAP00000027841	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Metaxin.	0.638
IMMT	MTX2	ENSANAP00000005009	ENSANAP00000009052	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Metaxin 2.	0.910
IMMT	MTX3	ENSANAP00000005009	ENSANAP00000009476	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Metaxin.	0.590
IMMT	SAMM50	ENSANAP00000005009	ENSANAP00000006007	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	SAMM50 sorting and assembly machinery component.	0.967
IMMT	TOMM40	ENSANAP00000005009	ENSANAP00000033306	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Translocase of outer mitochondrial membrane 40.	0.588
IMMT	TOMM40L	ENSANAP00000005009	ENSANAP00000005736	MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Translocase of outer mitochondrial membrane 40 like.	0.576
MBTPS2	SAMM50	ENSANAP00000009507	ENSANAP00000006007	Membrane bound transcription factor peptidase, site 2.	SAMM50 sorting and assembly machinery component.	0.947