PTPRU protein (Aotus nancymaae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PTPRU

Protein tyrosine phosphatase receptor type U. (1438 aa)

Predicted Functional Partners:

PPM1M

0.776

KIT

0.768

CTNNB1

0.628

PTK7

0.624

CSF1R

0.597

PNKP

0.582

SNAP23

0.576

LRIT3

0.545

LRIT1

0.545

PPP1CC

0.499

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSF1R	KIT	ENSANAP00000020488	ENSANAP00000025420	Colony stimulating factor 1 receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.545
CSF1R	PTPRU	ENSANAP00000020488	ENSANAP00000006995	Colony stimulating factor 1 receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Protein tyrosine phosphatase receptor type U.	0.597
CTNNB1	PTPRU	ENSANAP00000032405	ENSANAP00000006995	Catenin beta 1.	Protein tyrosine phosphatase receptor type U.	0.628
KIT	CSF1R	ENSANAP00000025420	ENSANAP00000020488	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Colony stimulating factor 1 receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.545
KIT	PTPRU	ENSANAP00000025420	ENSANAP00000006995	Mast/stem cell growth factor receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Protein tyrosine phosphatase receptor type U.	0.768
LRIT1	LRIT3	ENSANAP00000022204	ENSANAP00000004690	Leucine rich repeat, Ig-like and transmembrane domains 1.	Leucine rich repeat, Ig-like and transmembrane domains 3.	0.567
LRIT1	PTK7	ENSANAP00000022204	ENSANAP00000022342	Leucine rich repeat, Ig-like and transmembrane domains 1.	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.948
LRIT1	PTPRU	ENSANAP00000022204	ENSANAP00000006995	Leucine rich repeat, Ig-like and transmembrane domains 1.	Protein tyrosine phosphatase receptor type U.	0.545
LRIT3	LRIT1	ENSANAP00000004690	ENSANAP00000022204	Leucine rich repeat, Ig-like and transmembrane domains 3.	Leucine rich repeat, Ig-like and transmembrane domains 1.	0.567
LRIT3	PTK7	ENSANAP00000004690	ENSANAP00000022342	Leucine rich repeat, Ig-like and transmembrane domains 3.	Protein tyrosine kinase 7 (inactive); Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.948
LRIT3	PTPRU	ENSANAP00000004690	ENSANAP00000006995	Leucine rich repeat, Ig-like and transmembrane domains 3.	Protein tyrosine phosphatase receptor type U.	0.545
PNKP	PPM1M	ENSANAP00000039651	ENSANAP00000035621	Polynucleotide kinase 3'-phosphatase.	PPM-type phosphatase domain-containing protein.	0.582
PNKP	PPP1CC	ENSANAP00000039651	ENSANAP00000000869	Polynucleotide kinase 3'-phosphatase.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.431
PNKP	PTPRU	ENSANAP00000039651	ENSANAP00000006995	Polynucleotide kinase 3'-phosphatase.	Protein tyrosine phosphatase receptor type U.	0.582
PPM1M	PNKP	ENSANAP00000035621	ENSANAP00000039651	PPM-type phosphatase domain-containing protein.	Polynucleotide kinase 3'-phosphatase.	0.582
PPM1M	PPP1CC	ENSANAP00000035621	ENSANAP00000000869	PPM-type phosphatase domain-containing protein.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.495
PPM1M	PTPRU	ENSANAP00000035621	ENSANAP00000006995	PPM-type phosphatase domain-containing protein.	Protein tyrosine phosphatase receptor type U.	0.776
PPM1M	SNAP23	ENSANAP00000035621	ENSANAP00000019818	PPM-type phosphatase domain-containing protein.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.572
PPP1CC	PNKP	ENSANAP00000000869	ENSANAP00000039651	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	Polynucleotide kinase 3'-phosphatase.	0.431
PPP1CC	PPM1M	ENSANAP00000000869	ENSANAP00000035621	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	PPM-type phosphatase domain-containing protein.	0.495