BCL7C protein (Aotus nancymaae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BCL7C

BAF chromatin remodeling complex subunit BCL7C. (242 aa)

Predicted Functional Partners:

SS18

0.964

ARID1A

0.915

SMARCD1

0.913

SMARCB1

0.905

SMARCA4

0.905

SMARCA2

0.899

SMARCD2

0.884

ARID1B

0.884

DPF2

0.880

SMARCD3

0.879

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID1A	ARID1B	ENSANAP00000015615	ENSANAP00000026957	AT-rich interaction domain 1A.	AT-rich interaction domain 1B.	0.995
ARID1A	BCL7C	ENSANAP00000015615	ENSANAP00000007792	AT-rich interaction domain 1A.	BAF chromatin remodeling complex subunit BCL7C.	0.915
ARID1A	DPF2	ENSANAP00000015615	ENSANAP00000035393	AT-rich interaction domain 1A.	Double PHD fingers 2.	0.975
ARID1A	SMARCA2	ENSANAP00000015615	ENSANAP00000017626	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.	0.989
ARID1A	SMARCA4	ENSANAP00000015615	ENSANAP00000039360	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.996
ARID1A	SMARCB1	ENSANAP00000015615	ENSANAP00000028986	AT-rich interaction domain 1A.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	0.994
ARID1A	SMARCD1	ENSANAP00000015615	ENSANAP00000017283	AT-rich interaction domain 1A.	SWIB domain-containing protein.	0.996
ARID1A	SMARCD2	ENSANAP00000015615	ENSANAP00000019491	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.	0.988
ARID1A	SMARCD3	ENSANAP00000015615	ENSANAP00000002673	AT-rich interaction domain 1A.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.991
ARID1A	SS18	ENSANAP00000015615	ENSANAP00000015732	AT-rich interaction domain 1A.	SS18 subunit of BAF chromatin remodeling complex.	0.908
ARID1B	ARID1A	ENSANAP00000026957	ENSANAP00000015615	AT-rich interaction domain 1B.	AT-rich interaction domain 1A.	0.995
ARID1B	BCL7C	ENSANAP00000026957	ENSANAP00000007792	AT-rich interaction domain 1B.	BAF chromatin remodeling complex subunit BCL7C.	0.884
ARID1B	DPF2	ENSANAP00000026957	ENSANAP00000035393	AT-rich interaction domain 1B.	Double PHD fingers 2.	0.952
ARID1B	SMARCA2	ENSANAP00000026957	ENSANAP00000017626	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2.	0.986
ARID1B	SMARCA4	ENSANAP00000026957	ENSANAP00000039360	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4.	0.989
ARID1B	SMARCB1	ENSANAP00000026957	ENSANAP00000028986	AT-rich interaction domain 1B.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	0.988
ARID1B	SMARCD1	ENSANAP00000026957	ENSANAP00000017283	AT-rich interaction domain 1B.	SWIB domain-containing protein.	0.990
ARID1B	SMARCD2	ENSANAP00000026957	ENSANAP00000019491	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2.	0.980
ARID1B	SMARCD3	ENSANAP00000026957	ENSANAP00000002673	AT-rich interaction domain 1B.	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3.	0.978
ARID1B	SS18	ENSANAP00000026957	ENSANAP00000015732	AT-rich interaction domain 1B.	SS18 subunit of BAF chromatin remodeling complex.	0.890