FAM71B protein (Aotus nancymaae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FAM71B

Family with sequence similarity 71 member B. (600 aa)

Predicted Functional Partners:

CCDC136

0.452

LOC105712335

0.442

C10orf82

0.428

DPPA4

0.413

SPINK5

0.402

PROCA1

0.400

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C10orf82	FAM71B	ENSANAP00000020574	ENSANAP00000008045	Chromosome 10 open reading frame 82.	Family with sequence similarity 71 member B.	0.428
CCDC136	FAM71B	ENSANAP00000008415	ENSANAP00000008045	Coiled-coil domain containing 136.	Family with sequence similarity 71 member B.	0.452
CCDC136	LOC105712335	ENSANAP00000008415	ENSANAP00000028053	Coiled-coil domain containing 136.	Uncharacterized protein.	0.465
DPPA4	FAM71B	ENSANAP00000024418	ENSANAP00000008045	Developmental pluripotency associated 4.	Family with sequence similarity 71 member B.	0.413
FAM71B	C10orf82	ENSANAP00000008045	ENSANAP00000020574	Family with sequence similarity 71 member B.	Chromosome 10 open reading frame 82.	0.428
FAM71B	CCDC136	ENSANAP00000008045	ENSANAP00000008415	Family with sequence similarity 71 member B.	Coiled-coil domain containing 136.	0.452
FAM71B	DPPA4	ENSANAP00000008045	ENSANAP00000024418	Family with sequence similarity 71 member B.	Developmental pluripotency associated 4.	0.413
FAM71B	LOC105712335	ENSANAP00000008045	ENSANAP00000028053	Family with sequence similarity 71 member B.	Uncharacterized protein.	0.442
FAM71B	PROCA1	ENSANAP00000008045	ENSANAP00000038426	Family with sequence similarity 71 member B.	Protein interacting with cyclin A1.	0.400
FAM71B	SPINK5	ENSANAP00000008045	ENSANAP00000034277	Family with sequence similarity 71 member B.	Serine peptidase inhibitor, Kazal type 5.	0.402
LOC105712335	CCDC136	ENSANAP00000028053	ENSANAP00000008415	Uncharacterized protein.	Coiled-coil domain containing 136.	0.465
LOC105712335	FAM71B	ENSANAP00000028053	ENSANAP00000008045	Uncharacterized protein.	Family with sequence similarity 71 member B.	0.442
PROCA1	FAM71B	ENSANAP00000038426	ENSANAP00000008045	Protein interacting with cyclin A1.	Family with sequence similarity 71 member B.	0.400
SPINK5	FAM71B	ENSANAP00000034277	ENSANAP00000008045	Serine peptidase inhibitor, Kazal type 5.	Family with sequence similarity 71 member B.	0.402