SPATA5L1 protein (Aotus nancymaae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SPATA5L1

Spermatogenesis associated 5 like 1. (753 aa)

Predicted Functional Partners:

UBXN7

0.999

UFD1

0.955

DERL1

0.954

YOD1

0.945

UBXN1

0.938

NPLOC4

0.931

FAAP100

0.931

UBXN6

0.929

UBXN4

0.918

SYVN1

0.916

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DERL1	FAAP100	ENSANAP00000030115	ENSANAP00000041625	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	FA core complex associated protein 100.	0.913
DERL1	NPLOC4	ENSANAP00000030115	ENSANAP00000036198	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	NPL4 homolog, ubiquitin recognition factor.	0.913
DERL1	SPATA5L1	ENSANAP00000030115	ENSANAP00000009599	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Spermatogenesis associated 5 like 1.	0.954
DERL1	SYVN1	ENSANAP00000030115	ENSANAP00000013610	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Synoviolin 1.	0.981
DERL1	UBXN1	ENSANAP00000030115	ENSANAP00000019475	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	UBX domain protein 1.	0.962
DERL1	UFD1	ENSANAP00000030115	ENSANAP00000027462	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	Ubiquitin recognition factor in ER associated degradation 1.	0.965
FAAP100	DERL1	ENSANAP00000041625	ENSANAP00000030115	FA core complex associated protein 100.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.913
FAAP100	SPATA5L1	ENSANAP00000041625	ENSANAP00000009599	FA core complex associated protein 100.	Spermatogenesis associated 5 like 1.	0.931
FAAP100	SYVN1	ENSANAP00000041625	ENSANAP00000013610	FA core complex associated protein 100.	Synoviolin 1.	0.647
FAAP100	UBXN1	ENSANAP00000041625	ENSANAP00000019475	FA core complex associated protein 100.	UBX domain protein 1.	0.404
FAAP100	UBXN6	ENSANAP00000041625	ENSANAP00000030149	FA core complex associated protein 100.	UBX domain protein 6.	0.715
FAAP100	UBXN7	ENSANAP00000041625	ENSANAP00000013732	FA core complex associated protein 100.	UBX domain-containing protein 7.	0.999
FAAP100	UFD1	ENSANAP00000041625	ENSANAP00000027462	FA core complex associated protein 100.	Ubiquitin recognition factor in ER associated degradation 1.	0.971
FAAP100	YOD1	ENSANAP00000041625	ENSANAP00000016033	FA core complex associated protein 100.	YOD1 deubiquitinase.	0.907
NPLOC4	DERL1	ENSANAP00000036198	ENSANAP00000030115	NPL4 homolog, ubiquitin recognition factor.	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.	0.913
NPLOC4	SPATA5L1	ENSANAP00000036198	ENSANAP00000009599	NPL4 homolog, ubiquitin recognition factor.	Spermatogenesis associated 5 like 1.	0.931
NPLOC4	SYVN1	ENSANAP00000036198	ENSANAP00000013610	NPL4 homolog, ubiquitin recognition factor.	Synoviolin 1.	0.649
NPLOC4	UBXN1	ENSANAP00000036198	ENSANAP00000019475	NPL4 homolog, ubiquitin recognition factor.	UBX domain protein 1.	0.614
NPLOC4	UBXN6	ENSANAP00000036198	ENSANAP00000030149	NPL4 homolog, ubiquitin recognition factor.	UBX domain protein 6.	0.727
NPLOC4	UBXN7	ENSANAP00000036198	ENSANAP00000013732	NPL4 homolog, ubiquitin recognition factor.	UBX domain-containing protein 7.	0.999