STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PATL1PAT1 homolog 1, processing body mRNA decay factor. (770 aa)    
Predicted Functional Partners:
LSM1
U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.
    
 0.983
DCP2
Decapping mRNA 2.
    
 0.981
EDC3
Enhancer of mRNA decapping 3.
    
 0.978
DCP1A
Decapping mRNA 1A.
    
 0.977
EDC4
Enhancer of mRNA decapping 4.
    
 0.976
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.972
CNOT1
CCR4-NOT transcription complex subunit 1.
    
 0.969
XRN1
5'-3' exoribonuclease 1.
    
 0.964
CNOT7
Uncharacterized protein.
    
 0.959
CNOT8
CCR4-NOT transcription complex subunit 8.
    
 0.959
Your Current Organism:
Aotus nancymaae
NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.