LOC105710475 protein (Aotus nancymaae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105710475

RNA_GG_bind domain-containing protein. (378 aa)

Predicted Functional Partners:

NCBP2

0.950

NCBP1

0.875

ENSANAP00000003754

0.867

SRRT

0.805

PCF11

0.697

HUWE1

0.626

NUCKS1

0.580

KIF24

0.578

TECRL

0.578

NOL3

0.577

Your Current Organism:

Aotus nancymaae

NCBI taxonomy Id: 37293
Other names: A. nancymaae, Aotus nancymai

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSANAP00000003754	LOC105710475	ENSANAP00000003754	ENSANAP00000010902	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	RNA_GG_bind domain-containing protein.	0.867
ENSANAP00000003754	NCBP1	ENSANAP00000003754	ENSANAP00000015812	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Nuclear cap binding protein subunit 1.	0.912
ENSANAP00000003754	NCBP2	ENSANAP00000003754	ENSANAP00000002479	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.912
HUWE1	LOC105710475	ENSANAP00000023703	ENSANAP00000010902	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.	RNA_GG_bind domain-containing protein.	0.626
KIF24	LOC105710475	ENSANAP00000030823	ENSANAP00000010902	Kinesin family member 24; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	RNA_GG_bind domain-containing protein.	0.578
KIF24	TECRL	ENSANAP00000030823	ENSANAP00000032623	Kinesin family member 24; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Trans-2,3-enoyl-CoA reductase like.	0.776
LOC105710475	ENSANAP00000003754	ENSANAP00000010902	ENSANAP00000003754	RNA_GG_bind domain-containing protein.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.867
LOC105710475	HUWE1	ENSANAP00000010902	ENSANAP00000023703	RNA_GG_bind domain-containing protein.	HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.	0.626
LOC105710475	KIF24	ENSANAP00000010902	ENSANAP00000030823	RNA_GG_bind domain-containing protein.	Kinesin family member 24; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.578
LOC105710475	NCBP1	ENSANAP00000010902	ENSANAP00000015812	RNA_GG_bind domain-containing protein.	Nuclear cap binding protein subunit 1.	0.875
LOC105710475	NCBP2	ENSANAP00000010902	ENSANAP00000002479	RNA_GG_bind domain-containing protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.950
LOC105710475	NOL3	ENSANAP00000010902	ENSANAP00000020674	RNA_GG_bind domain-containing protein.	Nucleolar protein 3.	0.577
LOC105710475	NUCKS1	ENSANAP00000010902	ENSANAP00000017140	RNA_GG_bind domain-containing protein.	Nuclear casein kinase and cyclin dependent kinase substrate 1.	0.580
LOC105710475	PCF11	ENSANAP00000010902	ENSANAP00000040773	RNA_GG_bind domain-containing protein.	PCF11 cleavage and polyadenylation factor subunit.	0.697
LOC105710475	SRRT	ENSANAP00000010902	ENSANAP00000028075	RNA_GG_bind domain-containing protein.	Serrate, RNA effector molecule.	0.805
LOC105710475	TECRL	ENSANAP00000010902	ENSANAP00000032623	RNA_GG_bind domain-containing protein.	Trans-2,3-enoyl-CoA reductase like.	0.578
NCBP1	ENSANAP00000003754	ENSANAP00000015812	ENSANAP00000003754	Nuclear cap binding protein subunit 1.	GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.912
NCBP1	LOC105710475	ENSANAP00000015812	ENSANAP00000010902	Nuclear cap binding protein subunit 1.	RNA_GG_bind domain-containing protein.	0.875
NCBP1	NCBP2	ENSANAP00000015812	ENSANAP00000002479	Nuclear cap binding protein subunit 1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.999
NCBP1	PCF11	ENSANAP00000015812	ENSANAP00000040773	Nuclear cap binding protein subunit 1.	PCF11 cleavage and polyadenylation factor subunit.	0.882