STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000717405_00502Unannotated protein. (131 aa)    
Predicted Functional Partners:
GCA_000717405_00729
Unannotated protein.
     
 0.692
GCA_000717405_00503
Unannotated protein.
  
  
 0.561
GCA_000717405_05336
Unannotated protein.
    
 0.549
GCA_000717405_05337
Unannotated protein.
    
 0.549
GCA_000717405_03922
Unannotated protein.
  
 
 0.507
GCA_000717405_05237
Unannotated protein.
  
     0.473
GCA_000717405_01986
Unannotated protein.
   
 
 0.450
GCA_000717405_05375
Unannotated protein.
   
 
 0.450
GCA_000717405_01067
Unannotated protein.
  
  
 0.446
GCA_000717405_03628
Unannotated protein.
   
  
 0.444
Your Current Organism:
Nocardia carnea
NCBI taxonomy Id: 37328
Other names: ATCC 6847, CCUG 48177, CIP 104509, DSM 43397, IFO 14403, JCM 3375, N. carnea, NBRC 14403, NRRL WC-3809, Streptomyces carneus, Streptothrix carnea, VKM Ac-814
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.