STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000717405_00952Unannotated protein. (512 aa)    
Predicted Functional Partners:
GCA_000717405_00953
Unannotated protein.
       0.554
GCA_000717405_06543
Unannotated protein.
  
     0.533
GCA_000717405_01738
Unannotated protein.
  
     0.474
GCA_000717405_00951
Unannotated protein.
       0.441
GCA_000717405_03905
Unannotated protein.
  
   
 0.418
GCA_000717405_05305
Unannotated protein.
  
     0.416
GCA_000717405_00608
Unannotated protein.
     
 0.408
GCA_000717405_04207
Unannotated protein.
  
     0.406
GCA_000717405_04779
Unannotated protein.
  
     0.406
GCA_000717405_05306
Unannotated protein.
  
     0.405
Your Current Organism:
Nocardia carnea
NCBI taxonomy Id: 37328
Other names: ATCC 6847, CCUG 48177, CIP 104509, DSM 43397, IFO 14403, JCM 3375, N. carnea, NBRC 14403, NRRL WC-3809, Streptomyces carneus, Streptothrix carnea, VKM Ac-814
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.