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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
urtEPart of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Ribose importer (TC 3. A. 1. 2. 1) family; Contains 2 ABC transporter domains. (230 aa)    
Predicted Functional Partners:
APA94324.1
High-affinity branched-chain amino acid transport system permease protein BraE; Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids. Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.
 
 0.998
urtB
Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane (By similarity); Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.
 
 
 0.997
urtD
Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Zinc importer (TC 3. A. 1. 15. 5) family; Contains 1 ABC transporter domain.
 
0.994
APA94322.1
Aliphatic amidase expression-regulating protein.
 
 
 0.991
APA95435.1
Hypothetical protein.
 
 
 0.971
APA97618.1
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily; Contains 1 ABC transporter domain.
 
  
0.948
APA97617.1
High-affinity branched-chain amino acid transport system permease protein BraE; Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids. Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.
  
 0.945
APA97616.1
High-affinity branched-chain amino acid transport system permease protein BraD; Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids. Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.
 
  
 0.871
APA94327.1
Hypothetical protein.
 
     0.752
APA97614.1
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein; Component of the high-affinity leucine, isoleucine, valine transport system I (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids; Belongs to the leucine-binding protein family.
 
  
 0.727
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
Server load: low (40%) [HD]
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