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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaCKEGG: rge:RGE_32800 4-carboxymuconolactone decarboxylase. (161 aa)    
Predicted Functional Partners:
urtD
Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Zinc importer (TC 3. A. 1. 15. 5) family; Contains 1 ABC transporter domain.
       0.698
urtE
Part of the ABC transporter complex RbsABCD involved in ribose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Ribose importer (TC 3. A. 1. 2. 1) family; Contains 2 ABC transporter domains.
       0.698
urtB
Part of the binding-protein-dependent transport system for branched-chain amino acids. Probably responsible for the translocation of the substrates across the membrane (By similarity); Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.
       0.697
APA94324.1
High-affinity branched-chain amino acid transport system permease protein BraE; Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids. Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily.
       0.697
ilvE
Branched-chain-amino-acid transaminase; Has NAD-dependent 17-beta-hydroxysteroid dehydrogenase activity. Converts oestradiol to oestrone. The physiological substrate is not known. Acts on oestradiol and 5-androstene-3- beta,17-beta-diol (in vitro) (By similarity); Belongs to the short-chain dehydrogenases/reductases (SDR) family; KEGG: ocu:100358400 branched-chain amino acid aminotransferase.
 
     0.693
APA99812.1
Hypothetical protein.
  
     0.604
APA94327.1
Hypothetical protein.
  
    0.600
APA99816.1
Hypothetical protein.
  
     0.573
APA97195.1
Hypothetical protein.
  
     0.570
APA94777.1
Hypothetical protein.
 
     0.567
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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