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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA94335.1Hypothetical protein. (169 aa)    
Predicted Functional Partners:
ksgA
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.790
APB00467.1
Uncharacterized protein.
  
     0.557
APB00161.1
Transcriptional regulator ClgR; Probably controls the response to vancomycin treatmen; vancomycin induces expression of the clp regulon (clpP1, clpP2 and clpC1); Contains 1 HTH cro/C1-type DNA-binding domain.
  
   
 0.495
APA94211.1
Platelet binding protein GspB; Plays a role in virulence and host-pathogen interactions. Mediates binding to human platelets via interaction with the human cell surface glycoprotein GP1BA; Belongs to the SraP family.
  
     0.485
APA94334.1
Uncharacterized protein; Belongs to the sigma-70 factor family.
       0.482
tatD
Belongs to the TatD-type hydrolase family; KEGG: nfa:nfa49050 TatD DNase family protein; Endodeoxyribonucleases producing 5'-phosphomonoesters.
     
 0.439
APA94231.1
Putative DNA-binding protein.
  
     0.438
APB00984.1
Single-stranded DNA-binding protein; Contains 1 SSB domain.
 
     0.424
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.423
whiB-2
Transcriptional regulator WhiB2; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.410
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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