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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA94386.1KEGG: mtuh:I917_03095 peptide deformylase. (316 aa)    
Predicted Functional Partners:
argJ
Glutamate N-acetyltransferase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
  
 
 0.941
argB-2
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
  
 
 0.916
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
     
 0.905
APB00164.1
Amino-acid N-acetyltransferase; Catalyzes the conversion of L-glutamate to alpha-N- acetyl-L-glutamate. L-glutamine is a significantly better substrate compared to L-glutamate; Belongs to the acetyltransferase family; Contains 1 N-acetyltransferase domain; KEGG: svi:Svir_25180 amino-acid N-acetyltransferase.
    
 0.904
alaA
Valine--pyruvate transaminase; Involved in the biosynthesis of alanine; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family; KEGG: asd:AS9A_4094 alanine-synthesizing transaminase.
    
 0.903
APA99893.1
Valine--pyruvate transaminase; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family; KEGG: ncy:NOCYR_2246 alanine-synthesizing transaminase.
    
 0.903
gdh2
Glutamate dehydrogenase; Catalyzes the reversible conversion of L-glutamate to 2- oxoglutarate; Belongs to the Glu/Leu/Phe/Val dehydrogenases family; KEGG: nfa:nfa13060 glutamate dehydrogenase.
     
  0.900
xthA
Exodeoxyribonuclease III; Major apurinic-apyrimidinic endonuclease of E. coli. It removes the damaged DNA at cytosines and guanines by cleaving on the 3'-side of the AP site by a beta-elimination reaction. It exhibits 3'-5'-exonuclease, 3'-phosphomonoesterase, 3'-repair diesterase and ribonuclease H activities. Belongs to the DNA repair enzymes AP/ExoA family; KEGG: xfa:XF1933 exodeoxyribonuclease III.
 
   
 0.862
APA94237.1
Uncharacterized protein; To M. tuberculosis Rv0495c and S. coelicolor SCO3349.
  
     0.671
APA94384.1
Hypothetical protein.
       0.669
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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