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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA94411.1Hypothetical protein. (333 aa)    
Predicted Functional Partners:
panC
Pantoate--beta-alanine ligase (AMP-forming); Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
   
 0.990
coaX
Pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
 
   
 0.936
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
 
   
 0.930
karS
Lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family; KEGG: ckp:ckrop_1644 lysyl-tRNA synthetase, class II.
  
  
 0.744
APA94406.1
Hypothetical protein.
       0.697
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
 
   
 0.673
APA94412.1
Hypothetical protein.
       0.669
APA94413.1
Hypothetical protein.
 
     0.603
APA95351.1
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the regio- and stereoselective reversible NAD- dependent reduction of (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) to (4R,6R)-4-hydroxy-2,2,6-trimethylcyclohexanone (actinol). Belongs to the short-chain dehydrogenases/reductases (SDR) family; KEGG: mva:Mvan_5284 3-oxoacyl-(acyl-carrier protein) reductase.
      
 0.526
folK
Belongs to the HPPK family; KEGG: mtu:Rv3606c 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.
       0.508
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
Server load: medium (48%) [HD]
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