STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA94422.1Uncharacterized protein; Belongs to the CdaR family. (424 aa)    
Predicted Functional Partners:
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Catalyzes the degradation of 2,5-dichloro-2,5- cyclohexadiene-1,4-diol (2,5-DDOL) into 2,5-dichlorohydroquinone (2,5-DCHQ). LinX appears not to be involved in gamma-HCH degradation pathway. Belongs to the short-chain dehydrogenases/reductases (SDR) family; KEGG: yal:AT01_1159 2-deoxy-D-gluconate 3-dehydrogenase.
 
     0.602
aldA
Lactaldehyde dehydrogenase; Catalyzes the conversion of 5-oxopentanoate (glutarate semialdehyde) to glutarate; Belongs to the aldehyde dehydrogenase family; KEGG: esc:Entcl_2233 lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase.
       0.537
APA98313.1
Hypothetical protein.
  
     0.512
APA95271.1
Hypothetical protein.
  
     0.500
APB00159.1
Hypothetical protein.
  
     0.446
APA95973.1
Uncharacterized protein; Cell membrane; Membrane; Transmembrane; Transmembrane helix.
  
     0.419
APA99309.1
Hypothetical protein.
  
     0.408
APA98470.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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