Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APA94608.1Hypothetical protein. (394 aa)    
Predicted Functional Partners:
APA94607.1
Hypothetical protein.
       0.513
APA94609.1
Belongs to the acyl-CoA dehydrogenase family; KEGG: mtu:Rv0873 null; With other acceptors.
       0.495
APA98143.1
Hypothetical protein.
 
     0.465
pycA
Pyruvate carboxylase; This protein is a component of the acetyl coenzyme A carboxylase comple; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; Contains 1 ATP-grasp domain; Contains 1 biotin carboxylation domain; KEGG: mad:HP15_3934 pyruvate carboxylase subunit A.
  
     0.440
APA97396.1
Hypothetical protein.
  
     0.421
APA94302.1
Uncharacterized protein; To M. tuberculosis Rv0476.
  
     0.414
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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