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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA94656.1Hypothetical protein. (284 aa)    
Predicted Functional Partners:
APB01626.1
Erythronolide synthase, modules 1 and; Contains 3 acyl carrier domains.
   
 0.684
APA98140.1
Hypothetical protein.
    
 0.672
APA97769.1
Hypothetical protein.
   
 0.639
APB01680.1
Calmodulin-like protein; Potential calcium sensor. Belongs to the calmodulin family; Contains 4 EF-hand domains.
   
 0.639
sbcD
Nuclease SbcCD subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
    
 0.625
APB01182.1
CysO-cysteine peptidase; Protease that hydrolyzes the covalent CysO-cysteine adduct synthesized by CysM to release L-cysteine and regenerate CysO; Belongs to the peptidase M67A family; Contains 1 MPN (JAB/Mov34) domain.
    
 0.621
APA98164.1
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.609
APA94659.1
Hypothetical protein.
  
  
 0.602
APB00106.1
Long-chain-fatty-acid--AMP ligase FadD32; Catalyzes the activation of long-chain fatty acids as acyl-adenylates (acyl-AMP), which are then transferred to the multifunctional polyketide synthase (PKS) for further chain extension; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.598
hrpB
RNA helicase; Belongs to the DEAD box helicase family; Contains 1 helicase ATP-binding domain; Contains 1 helicase C-terminal domain; KEGG: nbr:O3I_019500 ATP-dependent helicase HrpB.
    
 0.596
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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