STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA94681.1Putative quercetin 2,3-dioxygenase; Belongs to the pirin family. (257 aa)    
Predicted Functional Partners:
APA94680.1
Hypothetical protein.
       0.773
APA94683.1
Putative MFS-type transporter; Belongs to the major facilitator superfamily.
 
   
 0.507
APA94108.1
4,5-DOPA dioxygenase extradiol; Opens the cyclic ring of dihydroxy-phenylalanine (DOPA) between carbons 4 and 5, thus producing an unstable seco-DOPA that rearranges nonenzymatically to betalamic acid; Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family.
 
  
 0.486
APB01877.1
4,5-DOPA dioxygenase extradiol; Opens the cyclic ring of dihydroxy-phenylalanine (DOPA) between carbons 4 and 5, thus producing an unstable seco-DOPA that rearranges nonenzymatically to betalamic acid; Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family.
 
  
 0.486
APA94682.1
KEGG: ncy:NOCYR_5544 8-oxo-dGTP diphosphatase.
       0.432
APA95445.1
Hypothetical protein.
     
 0.424
APA96632.1
Hypothetical protein.
     
 0.424
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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