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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA94789.1Putative transcriptional regulator YwtF; Belongs to the LytR/CpsA/Psr regulatory protein family. (372 aa)    
Predicted Functional Partners:
APA98296.1
Hypothetical protein.
  
    0.788
APA96781.1
Transcriptional regulatory protein; Member of the two-component regulatory system BasS/BasR. BasR induces the transcription of the ugd, ais, arnBCADTEF and eptA-basRS loci, all involved in resistance to polymyxin (By similarity); Contains 1 OmpR/PhoB-type DNA-binding domain; Contains 1 response regulatory domain.
   
  
 0.756
npdA
NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily; Contains 1 deacetylase sirtuin-type domain; KEGG: cai:Caci_7099 NAD-dependent deacetylase; In linear amides.
  
    0.754
APA95477.1
Hypothetical protein.
 
   
0.754
APB00528.1
Response regulator MprA; Member of the two-component regulatory system MprB/MprA which contributes to maintaining a balance among several systems involved in stress resistance and is required for establishment and maintenance of persistent infection in the host. Functions as a transcriptional regulator that recognizes a 19-bp nucleotide motif comprizing two loosely conserved 8-bp direct DNA-binding motif repeats separated by a 3-bp spacer region (By similarity); Contains 1 OmpR/PhoB-type DNA-binding domain; Contains 1 response regulatory domain.
   
  
 0.743
APB01003.1
Transcriptional trans-activator of the gene (mprA) for the small neutral protease. Contains 1 HTH lysR-type DNA-binding domain.
   
  
 0.740
APA94185.1
Non-specific serine/threonine protein kinase; Global regulatory protein for secondary metabolite formation. Belongs to the AfsR/DnrI/RedD regulatory family; Contains 1 NB-ARC domain; Contains 1 OmpR/PhoB-type DNA-binding domain; Contains 3 TPR repeats; KEGG: ret:RHE_PF00532 non-specific serine/threonine protein kinase.
   
    0.735
APA98152.1
Hypothetical protein.
   
    0.733
APA99558.1
HTH-type transcriptional regulator ArgP; Controls the transcription of genes involved in arginine and lysine metabolism; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
   
  
 0.731
APA98762.1
HTH-type transcriptional regulator Mce2R; Negatively regulates the expression of its operon as well as expression of end (endonuclease 4); Contains 1 HTH gntR-type DNA-binding domain.
   
    0.728
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
Server load: low (30%) [HD]
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