STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA94790.1Hypothetical protein. (283 aa)    
Predicted Functional Partners:
APA94791.1
Hypothetical protein.
       0.695
APA94792.1
Hypothetical protein.
       0.609
APA96248.1
DNA helicase used for plasmid rolling-circle replication and also involved in UV repair. Belongs to the helicase family. UvrD subfamily; Contains 1 uvrD-like helicase ATP-binding domain; Contains 1 uvrD-like helicase C-terminal domain; KEGG: mtu:Rv3201c DNA helicase II / ATP-dependent DNA helicase PcrA; overlaps another CDS with the same product name.
 
     0.555
APA97166.1
Uncharacterized protein; Coiled coil.
  
     0.530
APA94794.1
KEGG: mtu:Rv3837c probable phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
  
    0.520
APA94772.1
Hypothetical protein.
  
     0.508
APB00004.1
Peptide chain release factor N(5)-glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily; KEGG: sgu:SGLAU_30035 release factor glutamine methyltransferase.
 
  
 0.508
pheA
Contains 1 ACT domain; Contains 1 prephenate dehydratase domain; KEGG: asd:AS9A_0084 prephenate dehydratase.
       0.507
APA99221.1
L,D-transpeptidase; Generates 3->3 cross-links in peptidoglycan, catalyzing the cleavage of the mDap(3)-D-Ala(4) bond of a tetrapeptide donor stem and the formation of a bond between the carbonyl of mDap(3) of the donor stem and the side chain of mDap(3) of the acceptor stem. Is specific for donor substrates containing a stem tetrapeptide since it cannot use pentapeptide stems (By similarity); Contains 1 YkuD domain.
     
 0.499
APB01173.1
Uncharacterized protein; To M. tuberculosis Rv1342c.
 
     0.480
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.