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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA94802.1Choline dehydrogenase; Belongs to the GMC oxidoreductase family; KEGG: rha:RHA1_ro01725 choline dehydrogenase; overlaps another CDS with the same product name. (96 aa)    
Predicted Functional Partners:
APA94803.1
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate; Belongs to the GMC oxidoreductase family; KEGG: ssan:NX02_19190 choline dehydrogenase; overlaps another CDS with the same product name.
     0.970
APB01637.1
Hypothetical protein.
  
 
 0.602
APA94132.1
Hypothetical protein.
    
 0.557
APA94133.1
Hypothetical protein.
    
 0.557
APA94656.1
Hypothetical protein.
    
 0.557
APA95399.1
Uncharacterized protein; To M. tuberculosis Rv1362c; overlaps another CDS with the same product name.
    
 0.557
APA95400.1
Uncharacterized protein; To M. tuberculosis Rv1363c; overlaps another CDS with the same product name.
    
 0.557
APA98471.1
Hypothetical protein.
    
 0.557
APA99460.1
Hypothetical protein.
    
 0.557
APB00351.1
Putative ankyrin repeat protein; Contains 3 ANK repeats.
    
 0.557
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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