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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vapC-2Ribonuclease VapC51; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (132 aa)    
Predicted Functional Partners:
APA94851.1
Antitoxin component of a toxin-antitoxin (TA) module.
  
 
 0.849
vapC-5
Ribonuclease VapC26; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.565
vapC-6
Hypothetical protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.552
APA94852.1
Hypothetical protein.
       0.498
APA98351.1
Hypothetical protein.
  
     0.423
APA94849.1
HTH-type transcriptional regulator PecS; Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM; Contains 1 HTH marR-type DNA-binding domain.
       0.417
mazF
Endoribonuclease MazF3; Toxic component of a type II toxin-antitoxin (TA) module. Acts as an endoribonuclease, cleaving in U-rich regions. Neutralized by cognate antitoxin MazE3; Belongs to the PemK/MazF family; KEGG: dak:DaAHT2_0745 mRNA interferase MazF; Acting on ester bonds.
 
   
 0.402
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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