STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA95012.1Hypothetical protein. (1283 aa)    
Predicted Functional Partners:
APA95013.1
Uncharacterized protein; KEGG: fra:Francci3_2911 carboxylate-amine ligase; Forming carbon-nitrogen bonds.
 
  
 0.982
APA95014.1
Uncharacterized protein; To M. leprae ML0607.
 
     0.922
APB00778.1
Uncharacterized protein; To Synechocystis PCC 6803 sll0335 and to M. tuberculosis Rv2567; KEGG: fre:Franean1_2292 carboxylate-amine ligase; Forming carbon-nitrogen bonds.
 
  
 0.899
APB00777.1
Hypothetical protein.
 
  
 0.879
APB00776.1
Uncharacterized protein; To M. tuberculosis Rv2569c.
 
     0.771
APA95090.1
Hypothetical protein.
      
 0.573
APA95011.1
Hypothetical protein.
       0.533
APA95010.1
Hypothetical protein.
       0.527
darS
Aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.507
APA98114.1
Annexin A11; Required for midbody formation and completion of the terminal phase of cytokinesis (By similarity). Binds specifically to calcyclin in a calcium-dependent manner; Belongs to the annexin family; Contains 4 annexin repeats.
       0.507
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.