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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA95963.1UPF0699 transmembrane protein YdbS; Belongs to the UPF0699 family. (171 aa)    
Predicted Functional Partners:
APA95962.1
Hypothetical protein.
 
  
 0.989
APB01311.1
Hypothetical protein.
  
  
 0.671
APA95964.1
Hypothetical protein.
       0.590
APA95661.1
Uncharacterized protein; To M. tuberculosis Rv1259.
       0.489
APA95966.1
Ferredoxin 7Fe; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
     
 0.430
dapC-2
Hypothetical protein.
       0.419
APA96188.1
A redox-regulated anti-sigma factor for extracytoplasmic function (ECF) sigma factor SigR, and a key sensor of disulfide stress. Holds SigR, its cognate ECF sigma factor, in an inactive form, inhibiting its sigma activity under reducing but not oxidizing condition; oxidation and reduction of the anti-sigma factor is reversible. Mycothiol (MSH) is competent for reduction of RsrA, allowing it to bind to SigR. In conjunction with its cognate sigma factor SigR may sense the intracellular level of reduced MSH. Probably releases SigR during oxidative stress; Belongs to the zinc-associated an [...]
  
    0.414
fbiC
FO synthase; Catalyzes the radical-mediated transfer of the hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino- 6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl- 8-hydroxy-5-deazariboflavin (FO); In the N-terminal sectio; belongs to the radical SAM superfamily. CofG family; In the C-terminal sectio; belongs to the radical SAM superfamily. CofH family; KEGG: ncy:NOCYR_4499 FO synthase; Transferring alkyl or aryl groups, other than methyl groups.
       0.407
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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