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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA96075.1Hypothetical protein. (262 aa)    
Predicted Functional Partners:
APA97729.1
Hypothetical protein.
  
 
 0.559
APA94393.1
Hypothetical protein.
  
 
 0.532
APA96077.1
Hypothetical protein.
       0.500
APA96076.1
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily; Contains 1 ABC transporter domain.
       0.468
APA96073.1
Multidrug efflux ATP-binding/permease protein; Overexpression increases resistance to chloramphenicol, ampicillin, streptomycin, tetracyclin and vancomycin; Belongs to the ABC transporter superfamily. Lipid exporter (TC 3. A. 1. 106) family; Contains 2 ABC transmembrane type-1 domains; Contains 2 ABC transporter domains.
  
 0.460
APA94960.1
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily. MsbA family; Contains 1 ABC transmembrane type-1 domain; Contains 1 ABC transporter domain.
  
 0.448
APA94495.1
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily; Contains 1 ABC transmembrane type-1 domain; Contains 1 ABC transporter domain.
  
 0.432
APA94633.1
Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation; Belongs to the ABC transporter superfamily. Lipid exporter (TC 3. A. 1. 106) family; Contains 1 ABC transmembrane type-1 domain; Contains 1 ABC transporter domain.
  
 0.432
APA94959.1
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily; Contains 1 ABC transmembrane type-1 domain; Contains 1 ABC transporter domain.
  
 0.432
msbA
Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation; Belongs to the ABC transporter superfamily. Lipid exporter (TC 3. A. 1. 106) family; Contains 1 ABC transmembrane type-1 domain; Contains 1 ABC transporter domain; KEGG: sru:SRU_2836 ATP-binding cassette, subfamily B, bacterial MsbA; Acting on acid anhydrides; catalyzing transmembrane movement of substances.
  
 0.432
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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