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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA96207.1Putative HTH-type transcriptional regulator YisV; In the C-terminal sectio; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family; Contains 1 HTH gntR-type DNA-binding domain. (227 aa)    
Predicted Functional Partners:
APA96208.1
This protein is part of an active transport system that transports exogenous cyanate into E. coli cells. Belongs to the major facilitator superfamily. Cyanate porter (TC 2. A. 1. 17) family.
 
     0.709
APA99656.1
HTH-type transcriptional repressor CsiR; Modulates expression of csiD and lhgO in a temporal manner during entry into stationary phase or during the first few hours of carbon starvation; Contains 1 HTH gntR-type DNA-binding domain.
 
  
 0.703
APA98264.1
Putative HTH-type transcriptional regulator; Contains 1 HTH gntR-type DNA-binding domain.
  
  
 0.671
APA97336.1
Transcriptional repressor of the arabinose utilization genes. Also regulates its own expression. Binds to two sequences within the promoters of the araABDLMNPQ-abfA operon and the araE gene, and to one sequence in the araR promoter. Contains 1 HTH gntR-type DNA-binding domain.
  
  
 0.629
APB00402.1
HTH-type transcriptional repressor PhnF; Represses the phnDCE operon, involved in the uptake of phosphate, under conditions of phosphate availability in the cell; Contains 1 HTH gntR-type DNA-binding domain.
  
  
 0.601
APB01531.1
Putative HTH-type transcriptional regulator; The imp locus inhibits the extrachromosomal maintenance of the Streptomyces plasmid SLP1. Contains 1 HTH gntR-type DNA-binding domain.
  
  
 0.568
APA98991.1
Hypothetical protein.
  
     0.558
APA96338.1
Putative HTH-type transcriptional regulator in the TAR-I ttuE-ttuC' intergenic region; Contains 1 HTH gntR-type DNA-binding domain.
 
  
 0.537
APA96206.1
Nitrate/nitrite transporter; Catalyzes nitrate uptake, nitrite uptake and nitrite export across the cytoplasmic membrane. Functions as a nitrate/nitrite exchanger, and protons are probably not co- transported with the substrate; Belongs to the major facilitator superfamily. Nitrate/nitrite porter (TC 2. A. 1. 8) family.
       0.501
accA
Acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase comple; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA; Belongs to the AccD/PCCB family; KEGG: nfa:nfa6710 acetyl-CoA carboxylase carboxyl transferase subunit alpha.
  
  
 0.498
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
Server load: low (36%) [HD]
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