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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA96263.1Hypothetical protein. (479 aa)    
Predicted Functional Partners:
APA95007.1
Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
  
  
 0.843
APA96264.1
Uncharacterized protein; Contains 1 PDZ (DHR) domain.
 
     0.832
clpP
Endopeptidase Clp; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
   
  
 0.792
APA97214.1
Uncharacterized protein; Cell membrane; Membrane; Signal; Transmembrane; Transmembrane helix.
  
     0.747
holA
KEGG: ckp:ckrop_1345 DNA polymerase III subunit delta.
  
     0.747
rbpA
RNA polymerase-binding protein RbpA; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.
  
     0.743
APA97698.1
KEGG: sen:SACE_4109 carboxyvinyl-carboxyphosphonate phosphorylmutase.
   
    0.741
APA99909.1
Hypothetical protein.
  
     0.741
APA99395.1
Putative HTH-type transcriptional regulator; Contains 1 HTH merR-type DNA-binding domain.
  
     0.735
APB00161.1
Transcriptional regulator ClgR; Probably controls the response to vancomycin treatmen; vancomycin induces expression of the clp regulon (clpP1, clpP2 and clpC1); Contains 1 HTH cro/C1-type DNA-binding domain.
  
     0.733
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.