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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA96903.1Lysine--tRNA ligase; Catalyzes the production of L-lysyl-tRNA(Lys)transfer and the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), one of the components of the bacterial membrane with a positive net charge. LPG synthesis contributes to the resistance to cationic antimicrobial peptides (CAMPs) and likely protects M. tuberculosis against the CAMPs produced by competiting microorganisms (bacteriocins). In fact, the modification of anionic phosphatidylglycerol with positively charged L-lysine resu [...] (457 aa)    
Predicted Functional Partners:
karS
Lysine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family; KEGG: ckp:ckrop_1644 lysyl-tRNA synthetase, class II.
 
  
 0.902
APA94995.1
Uncharacterized protein.
 
   
 0.814
APA97799.1
Hypothetical protein.
 
     0.599
APA99080.1
Hypothetical protein.
  
     0.544
APA96902.1
Hypothetical protein.
       0.512
APB01488.1
Hypothetical protein.
  
     0.508
APA97794.1
Multiple antibiotic resistance protein MarR; Repressor of the marRAB operon which is involved in the activation of both antibiotic resistance and oxidative stress genes. Binds to the marO operator/promoter site. Contains 1 HTH marR-type DNA-binding domain.
  
   
 0.462
ftsE
Energy-coupling factor transporter ATP-binding protein EcfA; Part of the ABC transporter FtsEX involved in cellular division.
     
 0.453
ssuE
FMN reductase (NADPH); Belongs to the SsuE family; KEGG: rpy:Y013_04995 FMN reductase.
       0.429
APA96900.1
Uncharacterized protein; To bacterial alkanal monooxygenase alpha and beta chains; KEGG: bcz:BCZK1759 null; Acting on paired donors, with incorporation or reduction of molecular oxygen. The oxygen incorporated need not be derived from O(2).
       0.426
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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