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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA97118.1Cholesterol oxidase; Catalyzes the oxidation and isomerization of cholesterol to cholestenone (4-cholesten-3-one), which is an initial step in the cholesterol degradation process. Belongs to the GMC oxidoreductase family; KEGG: rer:RER_10120 cholesterol oxidase. (86 aa)    
Predicted Functional Partners:
APB00356.1
Hypothetical protein.
 
     0.779
APB00357.1
KEGG: cai:Caci_5962 4-hydroxy-tetrahydrodipicolinate reductase.
 
     0.746
APB00228.1
Hypothetical protein.
  
    0.630
APA98140.1
Hypothetical protein.
  
 
 
 0.604
APB00708.1
KEGG: aav:Aave_4523 superoxide dismutase, Cu-Zn family.
 
  
 0.595
APA97864.1
Hypothetical protein.
  
 
  0.565
APA98346.1
WD repeat-containing protein 48 like protein; Regulator of deubiquitinating complexes. Activates deubiquitination by increasing the catalytic turnover without increasing the affinity of deubiquitinating enzymes for the substrate (By similarity); Belongs to the WD repeat WDR48 family; Contains 8 WD repeats.
  
 
  0.562
APA94132.1
Hypothetical protein.
    
 0.557
APA94133.1
Hypothetical protein.
    
 0.557
APA94656.1
Hypothetical protein.
    
 0.557
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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