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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA97394.1Uncharacterized protein; Cell membrane; Membrane; Transmembrane; Transmembrane helix. (537 aa)    
Predicted Functional Partners:
APA97393.1
Hypothetical protein.
 
   
 0.903
APA97395.1
Hypothetical protein.
       0.879
APA97391.1
Hypothetical protein.
 
   
 0.848
crtB
15-cis-phytoene synthase; Involved in the biosynthesis of carotenoids. Catalyzes the condensation of two molecules of geranylgeranyl diphosphate (GGPP) to give prephytoene diphosphate (PPPP) and the subsequent rearrangement of the cyclopropylcarbinyl intermediate to yield phytoene (By similarity); Belongs to the phytoene/squalene synthase family; KEGG: bmq:BMQ_0656 phytoene synthase.
 
  
 0.791
APA97392.1
Hypothetical protein.
       0.726
APA97396.1
Hypothetical protein.
 
     0.712
lcyB
Belongs to the lycopene cyclase family; KEGG: nfa:nfa34900 lycopene beta-cyclase.
 
  
 0.569
APB01661.1
Lycopene beta-cyclase; Catalyzes the conversion of the ubiquitous 5,6- epoxycarotenoids, antheraxanthin and violaxanthin, into capsanthin and capsorubin, respectively. Belongs to the lycopene cyclase family; KEGG: nno:NONO_c08340 lycopene beta-cyclase.
 
  
 0.495
chlD
Magnesium chelatase; Involved in bacteriochlorophyll biosynthesi; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family; KEGG: nno:NONO_c55210 magnesium chelatase subunit D.
  
  
 0.494
loxA
Arachidonate 15-lipoxygenase; Converts arachidonic acid to 15S- hydroperoxyeicosatetraenoic acid (HpETE) which is rapidly reduced to hydroxyeicosatetraenoic acid (HETE). Could act on exogenous human-derived substrates to potentially modulate the local inflammatory responses during P. aeruginosa infections; Belongs to the lipoxygenase family; Contains 1 lipoxygenase domain; KEGG: pae:PA1169 arachidonate 15-lipoxygenase.
  
     0.492
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
Server load: medium (42%) [HD]
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