STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiEAmidase; Hydrolyzes formamide with the production of ammonia which can be used as a source of nitrogen for growth. Also acts, more slowly, on acetamide, propanamide and butanamide. Belongs to the acetamidase/formamidase family; KEGG: shi:Shel_23480 amidase. (380 aa)    
Predicted Functional Partners:
APA97970.1
Asparaginyl-tRNA synthase (glutamine-hydrolyzing); Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln); Belongs to the amidase family. GatA subfamily; KEGG: rhl:LPU83_0206 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A.
  
 0.943
APA98854.1
Protein MgtC; Virulence factor required for growth in low Mg(2+) medium and for intramacrophage survival. May be involved in regulating membrane potential by activating Na(+)/K(+)-ATPase (By similarity); Belongs to the MgtC/SapB family.
  
    0.618
APA97618.1
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily; Contains 1 ABC transporter domain.
     
 0.573
APA97968.1
Putative HTH-type transcriptional regulator YcbG; Contains 1 HTH gntR-type DNA-binding domain.
       0.550
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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