STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA98023.1Putative HTH-type transcriptional regulator YuxN; Contains 1 HTH tetR-type DNA-binding domain. (199 aa)    
Predicted Functional Partners:
bglX
Beta-glucosidases are one of a number of cellulolytic enzymes involved in the degradation of cellulosic biomass. Catalyzes the last step releasing glucose from the inhibitory cellobiose (By similarity); Belongs to the glycosyl hydrolase 3 family; Contains 1 PA14 domain; KEGG: nno:NONO_c29350 beta-glucosidase.
 
     0.640
APA98024.1
Haloacetate dehalogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family; KEGG: bur:Bcep18194_B1142 haloacetate dehalogenase.
       0.528
APA98022.1
Belongs to the protein kinase superfamily. Ser/Thr protein kinase family; Contains 1 protein kinase domain; KEGG: nno:NONO_c70480 serine/threonine protein kinase, bacterial.
       0.447
APA95660.1
Hypothetical protein.
  
     0.405
APA96353.1
HTH-type transcriptional repressor KstR; Controls the expression of genes used for utilizing diverse lipids as energy sources; Contains 1 HTH tetR-type DNA-binding domain.
  
     0.400
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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