STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA98109.1Uncharacterized protein; Belongs to the Rv1128c/1148c/1588c/1702c/1945/3466 family; KEGG: pdx:Psed_2937 5-methylcytosine-specific restriction enzyme A; Endodeoxyribonucleases producing 5'-phosphomonoesters. (88 aa)    
Predicted Functional Partners:
APA94510.1
Uncharacterized protein.
  
  
 0.725
APA95486.1
Uncharacterized protein.
  
  
 0.725
APA97756.1
Uncharacterized protein; To M. tuberculosis Rv3776.
  
  
 0.714
APA95700.1
Uncharacterized protein; To M. tuberculosis Rv3776.
  
  
 0.702
APA96655.1
Uncharacterized protein; To M. tuberculosis Rv3776.
  
     0.664
APA98108.1
Hypothetical protein.
       0.440
APA96525.1
Hypothetical protein.
  
     0.438
APA98106.1
HTH-type transcriptional regulator MalT; Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides. Binds and recognizes a DNA motif (called the malT box): 5'-GGA[TG]GA-3'; Contains 1 HTH luxR-type DNA-binding domain.
 
     0.402
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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