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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA98239.1Hypothetical protein. (221 aa)    
Predicted Functional Partners:
APA98237.1
Hypothetical protein.
       0.524
APA98238.1
Hypothetical protein.
       0.524
APA95041.1
Hypothetical protein.
  
    0.503
APA98162.1
Hypothetical protein.
  
     0.496
APA97658.1
ABC transporter ATP-binding protein; Mediates resistance to the antibacterial peptide microcin J25. Functions as an efflux pump for microcin J25. Requires TolC for export of microcin J25; Belongs to the ABC transporter superfamily; Contains 1 ABC transmembrane type-1 domain; Contains 1 ABC transporter domain.
  
     0.446
APA96796.1
Hypothetical protein.
  
     0.439
APA98386.1
All-trans-8'-apo-beta-carotenal 15,15'-oxygenase; Cleaves a number of carotenals and carotenols in the all-trans configuration at the 15-15' double bond producing retinal or retinol, respectively. Also shows activity toward lycopenals and the corresponding alcohols. Does not cleave beta- carotene or lycopene. Belongs to the carotenoid oxygenase family; KEGG: nbr:O3I_034185 all-trans-8'-apo-beta-carotenal 15,15'-oxygenase.
  
     0.432
APA94928.1
Hypothetical protein.
  
     0.431
APA99183.1
Hypothetical protein.
  
     0.417
APA98148.1
Large-conductance mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer. Selective for cations. Rectifies with voltage; Belongs to the MscS (TC 1. A. 23) family.
  
     0.411
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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