Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APA98321.1Hypothetical protein. (46 aa)    
Predicted Functional Partners:
APA98318.1
Hypothetical protein; Belongs to the 4-oxalocrotonate tautomerase family.
       0.773
APA98319.1
Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily; KEGG: sen:SACE_2944 alcohol dehydrogenase.
       0.773
APA98320.1
Hypothetical protein.
       0.773
APA98317.1
Putative HTH-type transcriptional regulator; Contains 1 HTH tetR-type DNA-binding domain.
       0.546
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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