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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA98780.1Hypothetical protein. (87 aa)    
Predicted Functional Partners:
APA98781.1
Hypothetical protein.
 
     0.912
pyrD
Dihydroorotate dehydrogenase (quinone); Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.849
APA96939.1
KEGG: mmc:Mmcs_3453 cytidine deaminase.
  
     0.671
APB00971.1
Uncharacterized protein; Isopeptide bond; Ubl conjugation.
  
     0.670
APA97395.1
Hypothetical protein.
  
     0.647
APA96167.1
Hypothetical protein.
  
     0.644
APB01172.1
Putative lipoprotein LprD; To M. tuberculosis Rv1343c.
  
     0.641
APA97381.1
3'-5' exoribonuclease; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.621
APA99121.1
Activating signal cointegrator 1 complex subunit 2 like protein; Enhances NF-kappa-B, SRF and AP1 transactivation; Belongs to the ASCC2 family; Contains 1 CUE domain.
  
     0.597
APA98782.1
Hypothetical protein.
       0.579
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.