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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA98893.1Hypothetical protein. (270 aa)    
Predicted Functional Partners:
APA98417.1
Putative NAD(P)H nitroreductase acg; Belongs to the nitroreductase family.
  
  
 0.722
APA98377.1
Putative NAD(P)H nitroreductase; Belongs to the nitroreductase family.
  
  
 0.692
APA94928.1
Hypothetical protein.
  
     0.676
APA99414.1
Hypothetical protein.
 
     0.626
APA98362.1
Hypoxic response protein; Unlike some other CBS-domain containing proteins does not seem to bind AMP; Contains 2 CBS domains.
  
  
 0.563
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.554
APA97909.1
55.5 kDa and 49.5 kDa sporulation protein.
  
     0.553
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
  
   0.550
rpmA
Belongs to the ribosomal protein L27P family.
   
 
 0.547
rpmH
Belongs to the ribosomal protein L34P family.
   
 
 0.545
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.