STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APA98945.1Putative HTH-type transcriptional regulator YraN; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family. (272 aa)    
Predicted Functional Partners:
APB01734.1
HTH-type transcriptional regulator BsdA; Could be a positive regulator of bsdBCD expression in response to salicylic acid; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.768
APB00691.1
HTH-type transcriptional regulator ClcR; Involved in regulation of chlorinated catechol metabolism. Transcriptional activator of the clcABD chlorocatechol oxidative operon. Contains 1 HTH lysR-type DNA-binding domain.
  
     0.766
APB00311.1
HTH-type transcriptional regulator XapR; Positive regulator required for the expression of xapA and xapB. Binds to the inducer xanthosine. Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.765
APB01090.1
HTH-type transcriptional regulator AbgR; Could be the regulator of the abg operon. Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.761
APA99372.1
Putative HTH-type transcriptional regulator YwqM; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.760
APB00309.1
SDS degradation transcriptional activation protein; Activates the transcription of the sdsA gene for sodium dodecyl sulfate (SDS) degradation. Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
   
 0.760
APB01640.1
HTH-type transcriptional regulator AlsR; Regulates the expression of the alsSD operon for acetoin biosynthesis. Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.736
APA98612.1
HTH-type transcriptional regulator PcaQ; Activates transcription of the pcaDCHGB operon for the catabolism of the phenolic compound protocatechuate. Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.685
APA95778.1
HTH-type transcriptional regulator BsdA; Could be a positive regulator of bsdBCD expression in response to salicylic acid; Contains 1 HTH lysR-type DNA-binding domain; Belongs to the LysR transcriptional regulatory family.
  
     0.595
APA98946.1
Malate dehydrogenase (quinone); Belongs to the MQO family; KEGG: mmb:Mmol_1044 malate dehydrogenase (quinone).
       0.546
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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