STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APB00176.1Hypothetical protein. (331 aa)    
Predicted Functional Partners:
APB00175.1
Hypothetical protein.
  
    0.864
bkdA
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring); Component of the branched-chain alpha-ketoacid dehydrogenase (BCKADH) complex, that catalyzes the overall conversion of branched-chain alpha-ketoacids to acyl-CoA and CO(2); KEGG: sro:Sros_6420 2-oxoisovalerate dehydrogenase E1 component.
  
 0.855
APB00177.1
Hypothetical protein.
     
 0.826
rsmB
16S rRNA (cytosine(967)-C(5))-methyltransferase; May act as RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family; KEGG: strm:M444_07690 16S rRNA (cytosine967-C5)-methyltransferase.
  
 
 0.783
APA94736.1
Protein kinase that regulates many aspects of mycobacterial physiology. Is a key component of a signal transduction pathway that regulates cell growth, cell shape and cell division via phosphorylation of target proteins; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family; Contains 4 PASTA domains; Contains 1 protein kinase domain; KEGG: mkn:MKAN_14950 serine/threonine protein kinase, bacterial; overlaps another CDS with the same product name.
  
 
 0.729
APA96800.1
Belongs to the protein kinase superfamily. Ser/Thr protein kinase family; Contains 4 PASTA domains; Contains 1 protein kinase domain; KEGG: psim:KR76_11230 serine/threonine protein kinase, bacterial.
  
 
 0.729
APA97383.1
Belongs to the protein kinase superfamily. Ser/Thr protein kinase family; Contains 4 PASTA domains; Contains 1 protein kinase domain; KEGG: mxa:MXAN_3338 serine/threonine protein kinase, bacterial.
  
 
 0.729
APB00178.1
Dihydrolipoyllysine-residue succinyltransferase; KEGG: svt:SVTN_10605 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase).
  
 
 0.676
APA98140.1
Hypothetical protein.
  
 0.668
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.585
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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