STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APB00460.1Repressor for the exu regulon that encode genes involved in hexuronate utilization. It regulates the ExuT, UxaCA and UxuRAB operons. Binds D-tagaturonate and D-fructuronate as inducers. Contains 1 HTH gntR-type DNA-binding domain. (251 aa)    
Predicted Functional Partners:
APA96338.1
Putative HTH-type transcriptional regulator in the TAR-I ttuE-ttuC' intergenic region; Contains 1 HTH gntR-type DNA-binding domain.
 
  
 0.756
APA97857.1
Hypothetical protein.
 
  
 0.710
APA94327.1
Hypothetical protein.
 
  
 0.631
APA98666.1
HTH-type transcriptional regulator KipR; Transcriptional repressor of the kip gene-containing operon; Contains 1 HTH iclR-type DNA-binding domain; Contains 1 iclR-ED (iclR effector binding) domain.
 
  
 0.630
APA97336.1
Transcriptional repressor of the arabinose utilization genes. Also regulates its own expression. Binds to two sequences within the promoters of the araABDLMNPQ-abfA operon and the araE gene, and to one sequence in the araR promoter. Contains 1 HTH gntR-type DNA-binding domain.
  
  
 0.624
APB00461.1
Amino-acid permease AapA; Probable amino-acid or metabolite transport protein. Belongs to the amino acid-polyamine-organocation (APC) superfamily.
     
 0.570
APB00462.1
Asparaginase; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate; Belongs to the asparaginase 1 family. GatD subfamily; Contains 1 asparaginase/glutaminase domain; KEGG: psa:PST_0193 L-asparaginase.
       0.568
APA98264.1
Putative HTH-type transcriptional regulator; Contains 1 HTH gntR-type DNA-binding domain.
  
  
 0.557
APB00814.1
Putative HTH-type transcriptional regulator YagI; Contains 1 HTH iclR-type DNA-binding domain; Contains 1 iclR-ED (iclR effector binding) domain.
 
  
 0.547
APB00047.1
Hypothetical protein.
 
  
 0.532
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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