STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APB00758.1Uncharacterized protein; Belongs to the CdaR family. (539 aa)    
Predicted Functional Partners:
APB00759.1
Hypothetical protein.
       0.540
APB00261.1
Hypothetical protein.
  
     0.497
APA96445.1
Global regulatory protein for secondary metabolite formation. Belongs to the AfsR/DnrI/RedD regulatory family; Contains 1 NB-ARC domain; Contains 1 OmpR/PhoB-type DNA-binding domain; Contains 3 TPR repeats.
  
    0.452
APA97909.1
55.5 kDa and 49.5 kDa sporulation protein.
  
    0.435
APA99709.1
Hypothetical protein.
  
     0.427
APA98273.1
Hypothetical protein.
  
     0.425
APB00649.1
Hypothetical protein.
  
     0.420
APA97977.1
Hypothetical protein.
  
     0.413
APA98065.1
Global regulatory protein for secondary metabolite formation. Belongs to the AfsR/DnrI/RedD regulatory family; Contains 1 NB-ARC domain; Contains 1 OmpR/PhoB-type DNA-binding domain; Contains 3 TPR repeats; overlaps another CDS with the same product name.
  
    0.412
APA97711.1
Transcriptional regulatory protein EmbR; Positively regulates the transcription of the embCAB operon. Exhibits ATPase and GTPase activities (By similarity); Belongs to the AfsR/DnrI/RedD regulatory family; Contains 1 FHA domain; Contains 1 OmpR/PhoB-type DNA-binding domain.
  
    0.404
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.