STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APB01133.1May be an activator protein for the gylABX operon. Contains 1 HTH iclR-type DNA-binding domain; Contains 1 iclR-ED (iclR effector binding) domain. (254 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
     
 0.785
APB00047.1
Hypothetical protein.
  
     0.765
APA95527.1
Urea carboxylase; Involved in uracil catabolism. Hydrolysis of urea to ammonia and CO(2); Belongs to the DUR1,2 family; Contains 1 ATP-grasp domain; Contains 1 biotin carboxylation domain; Contains 1 biotinyl-binding domain; KEGG: spe:Spro_1419 urea carboxylase.
  
    0.764
APA97858.1
Acetyl-CoA carboxylase; This protein carries two functions: biotin carboxyl carrier protein and biotin carboxyltransferase; Contains 1 ATP-grasp domain; Contains 1 biotin carboxylation domain; Contains 1 biotinyl-binding domain; KEGG: msm:MSMEG_4716 acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.
  
    0.764
APB01131.1
Belongs to the UPF0759 family.
  
    0.669
APA97968.1
Putative HTH-type transcriptional regulator YcbG; Contains 1 HTH gntR-type DNA-binding domain.
 
  
 0.578
glpK-2
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
     
 0.537
APA99656.1
HTH-type transcriptional repressor CsiR; Modulates expression of csiD and lhgO in a temporal manner during entry into stationary phase or during the first few hours of carbon starvation; Contains 1 HTH gntR-type DNA-binding domain.
  
  
 0.528
APB00460.1
Repressor for the exu regulon that encode genes involved in hexuronate utilization. It regulates the ExuT, UxaCA and UxuRAB operons. Binds D-tagaturonate and D-fructuronate as inducers. Contains 1 HTH gntR-type DNA-binding domain.
 
  
 0.455
leuC
3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
  
  
 0.455
Your Current Organism:
Nocardia seriolae
NCBI taxonomy Id: 37332
Other names: ATCC 43993, CCUG 46828, CIP 104778, DSM 44129, IFO 15557, JCM 3360, N. seriolae, NBRC 15557
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