STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SETXSenataxin. (2604 aa)    
Predicted Functional Partners:
SCAF4
SR-related CTD associated factor 4.
   
 
 0.979
ENSTBEP00000012390
annotation not available
   
 
 0.957
ENSTBEP00000011544
annotation not available
   
 
 0.946
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase.
   
 
  0.892
ENSTBEP00000011274
annotation not available
    
 
 0.823
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.816
NIPBL
NIPBL cohesin loading factor.
   
    0.792
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
    
 
 0.773
DROSHA
Drosha ribonuclease III.
   
 
 0.733
NCBP2
Nuclear cap binding protein subunit 2.
    
 
 0.728
Your Current Organism:
Tupaia belangeri
NCBI taxonomy Id: 37347
Other names: T. belangeri, Tupaia glis belangeri, common tree shrew, northern tree shrew
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.