STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USB1U6 snRNA biogenesis phosphodiesterase 1. (232 aa)    
Predicted Functional Partners:
PRPF19
pre-mRNA processing factor 19.
    
   0.947
PLRG1
Pleiotropic regulator 1.
    
   0.746
CDC5L
Cell division cycle 5 like.
    
   0.706
SNW1
SNW domain containing 1.
    
 
 0.669
ENSTBEP00000006726
annotation not available
    
   0.641
DHX35
DEAH-box helicase 35.
    
   0.633
BCAS2
BCAS2 pre-mRNA processing factor.
    
   0.633
CWF19L2
CWF19 like cell cycle control factor 2.
    
   0.631
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.609
CCDC12
Coiled-coil domain containing 12.
    
   0.577
Your Current Organism:
Tupaia belangeri
NCBI taxonomy Id: 37347
Other names: T. belangeri, Tupaia glis belangeri, common tree shrew, northern tree shrew
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.