STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM2LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated. (95 aa)    
Predicted Functional Partners:
LSM3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.999
LSM5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
ENSTBEP00000011442
annotation not available
   
 0.999
LSM1
LSM1 homolog, mRNA degradation associated.
   
 0.999
LSM7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
   
 0.998
ENSTBEP00000012308
annotation not available
   
 0.997
ENSTBEP00000010839
annotation not available
   
 0.996
SART3
Spliceosome associated factor 3, U4/U6 recycling protein.
    
 
 0.991
Your Current Organism:
Tupaia belangeri
NCBI taxonomy Id: 37347
Other names: T. belangeri, Tupaia glis belangeri, common tree shrew, northern tree shrew
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.