STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRRTSerrate, RNA effector molecule. (884 aa)    
Predicted Functional Partners:
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.994
NCBP2
Nuclear cap binding protein subunit 2.
    
 0.993
MTREX
Mtr4 exosome RNA helicase.
   
 0.969
CWC22
CWC22 spliceosome associated protein homolog.
   
 
  0.919
DDX39B
DExD-box helicase 39B.
   
 0.913
ENSTBEP00000011139
annotation not available
     
 0.906
PPWD1
Peptidylprolyl isomerase domain and WD repeat containing 1.
   
 
  0.904
ENSTBEP00000004871
annotation not available
   
 
  0.904
SRRM1
Serine and arginine repetitive matrix 1.
   
 
  0.902
RBM10
RNA binding motif protein 10.
   
 
  0.873
Your Current Organism:
Tupaia belangeri
NCBI taxonomy Id: 37347
Other names: T. belangeri, Tupaia glis belangeri, common tree shrew, northern tree shrew
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.